Lin Gan (甘霖)

LinGAN.jpg


Contact

Mail: lingan@tsinghua.edu.cn

Current State

  • Assistant director, Director of the R&D Center, National Supercomputing Center in Wuxi (国家超级计算无锡中心主任助理,研发中心主任)
  • Postdoctoral Research Fellow, Department of Computer Science and Technology, Tsinghua University (清华大学计算机系博士后研究员)


Study Interests

  • My study interests include next-generation HPC solution targeting at better time-to-solution and energy-to-solution. In recent years, I have been focusing on designing novel solutions for resolving major challenges from important numerical applications such as climate modeling and exploration geophysics. The latest updates include using Sunway TaihuLight to achieve extremely large-scale simulation for numerical applications, and using reconfigurable system to achieve improvements in both the performance and the power efficiency.
  • 本人主要从事全新超算系统应用方法研究工作。近年来重点基于国产超算系统(如神威·太湖之光)以及可重构计算系统等,研究能解决重大应用需求的高性能、低能耗方法。
    • 1. 国产超算系统:设计高效的优化方案,完善我国国产超算系统的优化方法并积累经验,为提高用户开发效率提供良好借鉴,推动国产处理器在高性能计算更多关键应用中的使用,促进我国未来E级超级计算机的设计与研制。
    • 2.可重构计算系统:研究一套完整的通用可重构计算优化方案,提高硬件开发效率,进一步验证可重构系统在求解大规模科学计算问题的可行性与优越性等,为下一代高性能计算芯片与系统提供创新性高效率的计算方案。

Experience

  • 2011-2016 Tsinghua University, PhD, Computer Science (清华大学,工学博士)
  • 2014-2015 Stanford University, Visiting Scholar (美国斯坦福大学,访问学者)
  • 2013-2014 Imperial College London, Visiting Scholar (英国帝国理工学院,访问学者)
  • 2007-2011 Beijing University of Posts and Telecommunications, BE (北京邮电大学,工学学士)


Awards and Honours

  • IEEE-CS TCHPC Award for Excellence for Early Career Researchers in High Performance Computing, SC18, Dallas, 11/2018 [5]
  • 2017 Finalist of the ACM Gordon Bell Prize (corresponding author), SC17, Denver, 11/2017 [1]
  • Tsinghua-Inspur Computational Earth Science Young Researcher Award for the Year of 2017, Beijing, 03/2017 [2]
  • 2016 ACM Gordon Bell Prize (corresponding author), SC16, Salt Lake City, 11/2016 [1]
  • Most Significant Paper Award in 25 Years (1990-2014), one of the 27 papers selected from the 1,765 publications in the first 25 years of the International Conference on Field Programmable Logic and Application (FPL), London, 09/2015 [3]
  • Best Paper Award, CCF HPC China 2014, Guilin, 10/2014
  • IBM Imagine Cup World Champion, IBM, 12/2013


  • 全国青年岗位能手标兵(2018,共青团中央、人社部)[4]
  • 中国好人(敬业奉献,中央文明办)
  • 江苏省科协青年人才托举工程(2018-2019)
  • 江苏好人(爱岗敬业类,江苏省文明办)
  • 江苏最美青年(2018,江苏省委)
  • 无锡好人(2018,无锡市)
  • 滨湖区十大杰出青年(2018,滨湖区)
  • 无锡最美青年工匠(2017,无锡团市委)
  • 优秀博士毕业生(2016,清华大学计算机系)

PI Project

  • 面向浅水波大气动力方程求解器的可重构计算方法研究 (国家自然科学基金青年基金,2018.01至今)
  • 面向三维欧拉大气动力方程求解器的可重构计算方法研究 (博士后科学基金面上项目,2017.01至今)

Selected Professional Services

  • SC 2018: BoF Selection Committee
  • ICCS 2018: Workshop Co-chair, Local Co-chair
  • ICCS 2018: PC member
  • CCGrid 2018: PC member
  • IEEE Tsinghua Student Chair, 2015

Future Event:

  • CLUSTER 2021: PC Co-Chair
  • ISC 2020: HPC in Asia Chair
  • SC 2019: Workshop reviewer
  • ICPP 2019: PC member
  • CCGrid 2019: PC member
  • ISC2019: HPC in Asia Deputy Chair

Selected Social Services

  • 江苏省十二届政协委员、省政协学习委员会委员(2018至今)
  • 共青团江苏省第十五届委员会委员(2018至今)
  • 共青团无锡市第十八届委员会常委(2018至今)


Patent

  • 数据并行压缩方法 (付昊桓,甘霖,杨广文等,发明专利,已授权)

Selected Publication

(*coresponding author)

Conference Paper

  • 23 Xin Wang, Lin Gan*, Jingheng Xu, JInzhe Yang, Haohuan Fu, Xiaomeng Huang, and Guangwen Yang, PLZMA: A Parallel Data Compression Method for Cloud Computing, ICA3PP2018(to appear)
  • 22. Lin Gan, Haohuan Fu, Chao Yang, Wayne Luk, Wei Xue, Oskar Mencer, Guangwen Yang, A highly-efficient and green data flow engine for solving euler atmospheric equations[C]//Field Programmable Logic and Applications (FPL), 2014 24th International Conference on. IEEE, 2014: 1-6.
  • 21. Lin Gan, Haohuan Fu, Wei Xue, Chao Yang, Xinliang Wang , Yang You, Guangwen Yang, Scaling and analyzing the stencil performance on multi-core and many-core architectures,Parallel and Distributed Systems (ICPADS), 2014 20th IEEE International Conference on. IEEE, 2014: 103-110.
  • 20. Lin Gan, Haohuan Fu, Wayne Luk, Chao Yang, Wei Xue, Xiaomeng Huang, Youhui Zhang, Guangwen Yang,Accelerating solvers for global atmospheric equations through mixed-precision data flow engine[C], Field Programmable Logic and Applications (FPL), 2013 23rd International Conference on. IEEE, 2013: 1-6.
  • 19. Lin Gan, Haohuan Fu, Wayne Luk, Chao Yang, Wei Xue, Guangwen Yang,Global Atmospheric Simulation on a Reconfigurable Platform, Field-Programmable Custom Computing Machines (FCCM), 2013 IEEE 21st Annual International Symposium on. IEEE, 2013: 230-230.
  • 18. Chao Yang *, Wei Xue*, Haohuan Fu *, Hongtao You , Xinliang Wang, Yulong Ao, Fangfang Liu, Lin Gan*, Ping Xu, Lanning Wang, Guangwen Yang,10M-core scalable fully-implicit solver for nonhydrostatic atmospheric dynamics[C]//High Performance Computing, Networking, Storage and Analysis, SC16: International Conference for. IEEE, 2016: 57-68.
  • 17. Haohuan Fu, Lin Gan*, Robert Clapp, Guangwen Yang,GPU Accelerations on the 3D Elastic RTM Method[C]//78th EAGE Conference and Exhibition 2016. 2016.
  • 16. Haohuan Fu*, Junfeng Liao, Nan Ding*, Xiaohui Duan, Lin Gan*, Yishuang Liang, Lanning Wang*, Jinzhe Yang, Yan Zheng, Weiguo Liu, Guangwen Yang,Redesigning CAM-SE for peta-scale climate modeling performance and ultra-high resolution on Sunway TaihuLight." Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis. ACM, 2017
  • 15 Wang, Xinliang, Ping Xu, Wei Xue, Yulong Ao, Chao Yang, Haohuan Fu, Lin Gan, Guangwen Yang, and Weimin Zheng. "A Fast Sparse Triangular Solver for Structured-grid Problems on Sunway Many-core Processor SW26010." In Proceedings of the 47th International Conference on Parallel Processing, p. 53. ACM, 2018.
  • 14. Li, Liandeng, Jiarui Fang, Jinlei Jiang, Lin Gan, Weijie Zheng, Haohuan Fu, and Guangwen Yang. "SW-AES: Accelerating AES Algorithm on the Sunway TaihuLight." In Ubiquitous Computing and Communications (ISPA/IUCC), 2017 IEEE International Symposium on Parallel and Distributed Processing with Applications and 2017 IEEE International Conference on, pp. 1204-1211. IEEE, 2017.
  • 13. Xu, Jingheng, Haohuan Fu, Lin Gan, Yu Song, Hongbo Peng, Wen Shi, and Guangwen Yang. "Evaluating the POWER8 Architecture through Optimizing Stencil-Based Algorithms." In Trustcom/BigDataSE/I​ SPA, 2016 IEEE, pp. 1374-1381. IEEE, 2016.
  • 12 Bingwei Chen, Haohuan Fu, Yanwen Wei, Conghui He, Wenqing Zhang, Yuxuan Li, Wubin Wan, Wei Zhang, Lin Gan, et.al, Simulating the Wenchuan Earthquake with Accurate Surface Topography on Sunway TaihuLight, SC18 (to appear)
  • 11 Xiaohui Duan, Ping Gao, Tingjian Zhang, Meng Zhang, Weiguo Liu, Wusheng Zhang, Wei Xue, Haohuan Fu, Lin Gan, et. al, Redesigning LAMMPS for Peta-scale and Hundred-billion-atom Simulation on Sunway TaihuLight, SC18 (to appear)
  • 10. Yulong Ao, Chao Yang, Xinliang Wang, Wei Xue, Haohuan Fu, Fangfang Liu, Lin Gan, Ping Xu, Wenjing Ma,26 PFLOPS Stencil Computations for Atmospheric Modeling on Sunway TaihuLight[C]//Parallel and Distributed Processing Symposium (IPDPS), 2017 IEEE International. IEEE, 2017: 535-544
  • 9. Jiengheng Xu, Haohuan Fu, Lin Gan, Chao Yang, Wei Xue, and Guangwen Yang, Accelerating the 3D euler atmospheric solver through heterogeneous CPU-GPU platforms, Proceedings of the ACM International Conference on Computing Frontiers. ACM, 2016: 353-356.
  • 8. Jingheng Xu, Haohuan Fu, Lin Gan, Chao Yang, Wei Xue, Shizhen Xu, Wenlai Zhao, Xinliang Wang, Bingwei Chen, Guangwen Yang, Generalized gpu acceleration for applications employing finite-volume methods[C]//Cluster, Cloud and Grid Computing (CCGrid), 2016 16th IEEE/ACM International Symposium on. IEEE, 2016: 126-135.
  • 7. Haohuan Fu, Jingheng Xu, Lin Gan, Chao Yang, Wei Xue, Wenlai Zhao, Wen Shi, Xinliang Wang, Guangwen Yang, Unleashing the performance potential of CPU-GPU platforms for the 3D atmospheric Euler solver[C]//Application-specific Systems, Architectures and Processors (ASAP), 2016 IEEE 27th International Conference on. IEEE, 2016: 41-49.
  • 6. Jingheng Xu, Haohuan Fu, Lin Gan, Yu Song, Hongbo Peng, Wen Shi, Guangwen Yang, Performance optimization of Jacobi stencil algorithms based on POWER8 architecture[C]//Application-specific Systems, Architectures and Processors (ASAP), 2016 IEEE 27th International Conference on. IEEE, 2016: 221-222.
  • 5. Jiarui Fang, Haohuan Fu, He Zhang, Wei Wu, Nanxun Dai, Lin Gan, Guangwen Yang,Optimizing Complex Spatially-Variant Coefficient Stencils for Seismic Modeling on GPU[C]//Parallel and Distributed Systems (ICPADS), 2015 IEEE 21st International Conference on. IEEE, 2015: 641-648.
  • 4. Bangtian Liu, Haohuan Fu, Lin Gan, Wenlai Zhao, Guangwen Yang,Optimizing Residue Number Reverse Converters through Bitwise Arithmetic on FPGAs[C]//Field-Programmable Custom Computing Machines (FCCM), 2015 IEEE 23rd Annual International Symposium on. IEEE, 2015: 236-243.
  • 3. Wei Xue, Chao Yang, Haohuan Fu, Xinliang Wang, Yangtong Xu, Lin Gan, Yutong Lu, Xiaoqian Zhu,Enabling and scaling a global shallow-water atmospheric model on tianhe-2[C]//Parallel and Distributed Processing Symposium, 2014 IEEE 28th International. IEEE, 2014: 745-754.
  • 2. Yang You, Haohuan Fu, Xiaomeng Huang, Guojie Song, Lin Gan, Wenjian Yu, Guangwen

Yang,Accelerating the 3D elastic wave forward modeling on GPU and MIC[C]//Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW), 2013 IEEE 27th International. IEEE, 2013: 1088-1096.

  • 1 Chao Yang, Wei Xue, Haohuan Fu, Lin Gan, Linfeng Li, Yangtong Xu, Yutong Lu, Jiachang Sun, Guangwen Yang, Weimin Zheng, A peta-scalable CPU-GPU algorithm for global atmospheric simulations, ACM SIGPLAN Notices. ACM, 2013, 48(8): 1-12.

Journal Paper

  • 10 Jingheng Xu, Haohuan Fu, Wen Shi, Lin Gan*, Yuxuan Li, Wayne Luk, Guangwen Yang, Performance Tuning and Analysis for Stencil-Based Applications on POWER8 Processor, ACM Transactions on Architecture & Code Optimization (to appear)
  • 9. Lin Gan, Haohuan Fu, Oskar Mencer, Wayne Luk, and Guangwen Yang, Data Flow Computing in Geoscience Applications, Advances in Computers.
  • 8. Lin Gan, Haohuan FU, Wayne Luk, Chao Yang, Wei Xue, and Guangwen Yang, Solving Mesoscale Atmospheric Dynamics Using a Reconfigurable Dataflow Architecture[J]. IEEE Micro, 2017, 37(4): 40-50.
  • 7. Lin Gan, Haohuan Fu, Wayne Luk, Chao Yang, Wei Xue, Xiaomeng Huang, Youhui Zhang, Guangwen Yang,Solving the global atmospheric equations through heterogeneous reconfigurable platforms[J]. ACM Transactions on Reconfigurable Technology and Systems (TRETS), 2015, 8(2): 11.
  • 6. Haohuan Fu, Lin Gan*, Robert G Clapp, Huabin Ruan, Oliver Pell, Oskar Mencer, Michael Flynn, Xiaomeng Huang, Guangwen Yang,Scaling reverse time migration performance through reconfigurable dataflow engines[J]. IEEE Micro, 2014, 34(1): 30-40.
  • 5. Haohuan Fu, Lin Gan, Chao Yang*, Wei Xue, Lanning Wang, Xinliang Wang, Xiaomeng Huang, Guangwen Yang,Solving global shallow water equations on heterogeneous supercomputers[J]. PloS one, 2017, 12(3): e0172583
  • 4 Mingxu Hu, Hongkun Yu, Kai Gu, Kunpeng Wang, Siyuan Ren, Bing Li, Lin Gan, Shizhen Xu, Guangwen Yang, Yuan Shen, Xueming Li, A particle-filter framework for robust cryoEM 3D reconstruction, Nature Method, (to appear)
  • 3. Zhao, W., Fu, H., Fang, J., Zheng, W., Gan, L, & Yang, G. (2018). Optimizing convolutional neural networks on the sunway taihulight supercomputer. ACM Transactions on Architecture & Code Optimization, 15(1), 1-26.
  • 2. Wei Xue, Chao Yang, Haohuan Fu, Xinliang Wang, Yangtong Xu, Junfeng Liao, Lin Gan, Lizhe Wang,Ultra-scalable CPU-MIC acceleration of mesoscale atmospheric modeling on Tianhe-2[J]. IEEE Transactions on Computers, 2015, 64(8): 2382-2393.
  • 1. Yang You, Haohuan Fu, Lin Gan, Xiaomeng Huang, Guangwen Yang,Evaluating multi-core and many-core architectures through accelerating the three-dimensional Lax–Wendroff correction stencil[J]. The International Journal of High Performance Computing Applications, 2014, 28(3): 301-318.

Reference

[1] 戈登·贝尔奖是超级计算应用领域年度最高荣誉,由美国计算机协会ACM颁发。2016年,我直接参与的千万核可扩展大气动力学全隐式模拟工作研究成果获得当年度“戈登·贝尔”奖,实现了该奖创办30年来我国在此大奖上零的突破,成为我国高性能计算应用发展的新里程碑,该成果也入选由两院院士评选的2016中国十大科技进展新闻,本人为获奖论文共同通讯作者。2017年,我直接参与了基于“神威·太湖之光”的全球气候模式的高性能模拟工作。该工作获得2017年“戈登·贝尔”奖最终提名,全球一共3项成果入围,本人为入围论文共同通讯作者。

[2] 清华大学-浪潮集团计算地球科学青年人才奖,该奖是国内计算地球科学领域首个也是目前唯一一个人才奖励计划,用于表彰在计算机与地球科学交叉领域取得突出贡献并且具有极高潜力的青年科研工作者,其候选人由两院院士、长江学者等知名学者推荐。

[3] 2015年,FPL国际会议评奖委员会从该领域25年(1990-2014)所收录的1765篇论文中选出了25篇(录用率1.5%)对领域发展具有突出贡献的论文,授予“25年领域最具影响力论文奖“。本人为第一作者的论文入选,系唯一一篇来自中国的获奖论文。该论文在超级计算硬件芯片领域提出了一系列创新性方法,获得应用领域同行的关注和认可,为进一步设计地球系统数值模拟的专用芯片、以及为未来超算系统全新架构的研究,提供了良好的借鉴。

[4] 全国青年岗位能手标兵和全国青年岗位能手是各行各业青年的先进代表,集中体现了当代青年爱岗敬业、勤于学习、勇于创新、甘于奉献的优秀品质,该称号由共青团中央和人力资源与社会保障部联合表彰,2018年全国范围内共表彰40位全国青年岗位能手标兵。

[5] IEEE高性能专委会杰出新人奖,设立于2016年,每年由IEEE在全球范围内表彰不超过3名,在HPC领域具有优异表现和极具潜力的青年科研工作者,系第一名获得该奖的中国科研工作者。